The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization.
Du K, Stöck M, Kneitz S, Klopp C, Woltering JM, Adolfi MC, Feron R, Prokopov D, Makunin A, Kichigin I, Schmidt C, Fischer P, Kuhl H, Wuertz S, Gessner J, Kloas W, Cabau C, Iampietro C, Parrinello H, Tomlinson C, Journot L, Postlethwait JH, Braasch I, Trifonov V, Warren WC, Meyer A, Guiguen Y, Schartl M.
Nature Ecology & Evolution (2020) 4, 841–852 https://doi.org/10.1038/s41559-020-1166-x
The contribution of ancient admixture to reproductive isolation between European sea bass lineages.
Duranton M, Allal F, Valière S, Bouchez O, Bonhomme F, Gagnaire P.
Evolution Letters (2020) 4, 226–242 https://doi.org/10.1002/evl3.169
Long-read genome sequence of sugar beet rhizosphere mycoparasite Pythium oligandrum
Faure C, Veyssière M, Boëlle B, San Clemente H, Bouchez O, Lopez-Roques C, Chaubet A, Martinez Y, Bezouška K, Suchánek M, Gaulin E, Rey T, Dumas
B.G3: Genes|Genomes|Genetics (2020) 10, 431–436 https://doi.org/10.1534/g3.119.400746
Characterization of a Y‐specific duplication/insertion of the anti‐Mullerian hormone type II receptor gene based on a chromosome‐scale genome assembly of yellow perch, Perca flavescens.
Feron R, Zahm M, Cabau C, Klopp C, Roques C, Bouchez O, Eché C, Valière S, Donnadieu C, Haffray P, Bestin A, Morvezen R, Acloque H, Euclide PT, Wen M, Jouano E, Schartl M, Postlethwait JH, Schraidt C, Christie MR, Larson WA, Herpin A, Guiguen Y.
Molecular Ecology Resources (2020) 20, 531–543 https://doi.org/10.1111/1755-0998.13133
Insertions and Duplications in the Polyproline Region of the Hepatitis E Virus.
Lhomme S, Nicot F, Jeanne N, Dimeglio C, Roulet A, Lefebvre C, Carcenac R, Manno M, Dubois M, Peron J-M, Alric L, Kamar N, Abravanel F, Izopet J.
Frontiers in Microbiology (2020) 11, 1 https://doi.org/10.3389/fmicb.2020.00001
Genome sequence of the euryhaline Javafish medaka, Oryzias javanicus: a small aquarium fish model for studies on adaptation to salinity
Takehana Y, Zahm M, Cabau C, Klopp C, Roques C, Bouchez O, Donnadieu C, Barrachina C, Journot L, Kawaguchi M, Yasumasu S, Ansai S, Naruse K, Inoue K, Shinzato C, Schartl M, Guiguen Y, Herpin A.
G3: Genes|Genomes|Genetics (2020) 10, 907–915 https://doi.org/10.1534/g3.119.400725
Modulation of quorum sensing as an adaptation to nodule cell infection during experimental evolution of legume symbionts
Tang M, Bouchez O, Cruveiller S, Masson-Boivin C, Capela D.
mBio (2020) 11, e03129-19, /mbio/11/1/mBio.03129-19.atom https://doi.org/10.1128/mBio.03129-19
A chromosome-scale genome assembly resource for Myriosclerotinia sulcatula infecting sedge grass (Carex sp.)
Kusch S, Ibrahim HMM, Zanchetta C, Lopez-Roques C, Donnadieu C, Raffaele S.
Molecular Plant-Microbe Interactions® (2020) 33, 880–883 https://doi.org/10.1094/MPMI-03-20-0060-A
Transport to the Slaughterhouse Affects the Salmonella Shedding and Modifies the Fecal Microbiota of Finishing Pigs
Massacci FR, Morelli A, Cucco L, Castinel A, Ortenzi R, Tofani S, Pezzotti G, Estellé J, Paniccià M, Magistrali CF.
Animals (2020) 10, 676 https://doi.org/10.3390/ani10040676
A multiscale approach reveals regulatory players of water stress responses in seeds during germination
Marine Saux, Maharajah Ponnaiah, Nicolas Langlade, Catherine Zanchetta, Thierry Balliau, Hayat El-Maarouf-Bouteau, Christophe Bailly
Plant Cell and environnement (2020), https://doi.org/10.1111/pce.13731
A behavior-manipulating virus relative as a source ofadaptive genes for Drosophila parasitoids
Di Giovanni D, Lepetit D, Guinet B, Bennetot B, Boulesteix M, Couté Y, Bouchez O, Ravallec M, Varaldi J.
Molecular Biology and Evolution (2020) msaa030 https://doi.org/10.1093/molbev/msaa030
Meta-omics Provides Insights into the Impact of Hydrocarbon Contamination on Microbial Mat Functioning
Aubé J, Senin P, Bonin P, Pringault O, Jeziorski C, Bouchez O, Klopp C, Guyoneaud R, Goñi-Urriza M.
Microbial Ecology (2020) 80, 286–295 https://doi.org/10.1007/s00248-020-01493-x
A tunable filter for high molecular weight DNA selection and linked-read sequencing
Milon N, Fuentes Rojas J-L, Castinel A, Bigot L, Bouwmans G, Baudelle K, Boutonnet A, Gibert A, Bouchez O, Donnadieu C, Ginot F, Bancaud A.
Lab on a Chip (2020) 20, 175–184 https://doi.org/10.1039/C9LC00965E
Gut microbiota derived metabolites contribute to intestinal barrier maturation at the suckling-to-weaning transition
Beaumont M, Paës C, Mussard E, Knudsen C, Cauquil L, Aymard P, Barilly C, Gabinaud B, Zemb O, Fourre S, Gautier R, Lencina C, Eutamène H, Theodorou V, Canlet C, Combes S.
Gut Microbes (2020) 11, 1268–1286 https://doi.org/10.1080/19490976.2020.1747335
Diversity of Pectobacteriaceae Species in Potato Growing Regions in Northern Morocco
Oulghazi S, Moumni M, Khayi S, Robic K, Sarfraz S, Lopez-Roques C, Vandecasteele C, Faure D.
Microorganisms (2020) 8, 895 https://doi.org/10.3390/microorganisms8060895
Early Introduction of Solid Feeds: Ingestion Level Matters More Than Prebiotic Supplementation for Shaping Gut Microbiota
Paës C, Gidenne T, Bébin K, Duperray J, Gohier C, Guené-Grand E, Rebours G, Bouchez O, Barilly C, Aymard P, Combes S.
Frontiers in Veterinary Science (2020) 7, 261 https://doi.org/10.3389/fvets.2020.00261
Biological rhythms in the deep-sea hydrothermal mussel Bathymodiolus azoricus.
Mat AM, Sarrazin J, Markov GV, Apremont V, Dubreuil C, Eché C, Fabioux C, Klopp C, Sarradin P-M, Tanguy A, Huvet A, Matabos M.
Nature Communications (2020) 11, 3454 https://doi.org/10.1038/s41467-020-17284-4
Genetic determinism of spontaneous masculinisation in XX female rainbow trout: new insights using medium throughput genotyping and whole‑genome sequencing
Fraslin C, Phocas F, Bestin A, Charles M, Bernard M, Krieg F, Dechamp N, Ciobotaru C, Hozé C, Petitprez F, Milhes M, Lluch J, Bouchez O, Poncet C, Hocdé P, Haffray P, Guiguen Y, Quillet E. Scientific Reports (2020) 10, 17693 https://doi.org/10.1038/s41598-020-74757-8
Daily transcriptomes of the copepod Calanus fnmarchicus during the summer solstice at high Arctic latitudes
Payton L, Noirot C, Hoede C, Hüppe L, Last K, Wilcockson D, Ershova EA, Valière S, Meyer B.
Scientific Data (2020) 7, 415 https://doi.org/10.1038/s41597-020-00751-4
Widely rhythmic transcriptome in Calanus finmarchicus during the high Arctic summer solstice period
Payton L, Hüppe L, Noirot C, Hoede C, Last KS, Wilcockson D, Ershova E, Valière S, Meyer B.
iScience (2021) 24, 101927 https://doi.org/10.1016/j.isci.2020.101927
Modeling protein destiny in developing fruit
Belouah I, Nazaret C, Pétriacq P, Prigent S, Bénard C, Mengin V, Blein-Nicolas M, Denton AK, Balliau T, Augé S, Bouchez O, Mazat J-P, Stitt M, Usadel B, Zivy M, Beauvoit B, Gibon Y, Colombié S.
Plant Physiology (2019) 180, 1709–1724 https://doi.org/10.1104/pp.19.00086
Transcriptomic and proteomic data in developing tomato fruit
Isma Belouah, Camille Benard, Alisandra Denton, Melisande Blein-Nicolas, Thierry Balliau, Emeline Teyssier, Philippe Gallusci, Olivier Bouchez, Bjorn Usadel, Michel Zivy, Yves Gibon, Sophie Colombi
Data in Brief (2020), https://doi.org/10.1016/j.dib.2019.105015
Diferences in resource use lead to coexistence of seed-transmitted microbial populations
Torres-Cortés, B. J. Garcia , S. Compant, S. Rezki, P. Jones, A. Préveaux, M. Briand, A. Roulet, O. Bouchez, D. Jacobson 2 & M. Barret
Scientific Reports (2020) 9:6648 https://doi.org/10.1038/s41598-019-42865-9
Genome structure and content of the rice root-knot nematode (Meloidogyne graminicola)
Ngan Thi Phan, Julie Orjuela, Etienne G. J. Danchin, Christophe Klopp, Laetitia Perfus-Barbeoch, Djampa K. Kozlowski, Georgios D. Koutsovoulos, Céline Lopez-Roques, Olivier Bouchez, Margot Zahm, Guillaume Besnard, Stéphane Bellafiore
Ecology & evolution (2020) https://doi.org/DOI: 10.1002/ece3.6680
Cryptic Patterns of Speciation in Cryptic Primates: Microendemic Mouse Lemurs and the Multispecies Coalescent
Poelstra JW, Salmona J, Tiley GP, SCHÜßLER D, Blanco MB, Bouchez O, Campbell CR, Etter PD, Hohenlohe PA, Iribar A, Johnson EA, Kappeler PM, Larsen PA, Manzi S, Ralison M, Randrianambinina B, Rasoloarison RM, Rasolofoson DW, Stahlke R, Weisrock DW, Williams RC, Chikhi L, Jr EEL, Yoder AD.
Systematic Biology (2020) 16 https://doi.org/DOI:10.1093/sysbio/syaa053
A simple method for high molecular-weight genomic DNA extraction suitable for long-read sequencing from spores of an obligate biotroph oomycete
Penouilh-Suzette C, Fourré S, Besnard G, Godiard L, Pecrix Y.
Journal of Microbiological Methods (2020) 178, 06054 https://doi.org/10.1016/j.mimet.2020.106054
Developmental Modulation of Root Cell Wall Architecture Confers Resistance to an Oomycete Pathogen
Gavrin A, Rey T, Torode TA, Toulotte J, Chatterjee A, Kaplan JL, Evangelisti E, Takagi H, Charoensawan V, Rengel D, Journet E-P, Debellé F, de Carvalho-Niebel F, Terauchi R, Braybrook S, Schornack S.
Current Biology (2020) 30, 4165-4176.e5 https://doi.org/10.1016/j.cub.2020.08.011
Complete Genome Sequence ofMicrobacteriumsp. Strain Nx66,Isolated from Waters Contaminated with Petrochemicals in ElSaf-Saf Valley, Algeria
Sarfraz S, Oulghazi S, Cigna J, Sahi ST, Riaz K, Tufail MR, Fayyaz A, Naveed K, Hameed A, Lopez-Roques C, Vandecasteele C, Faure D.
Microbiology Resource Announcements (2020) 9, e00420-20, /mra/9/32/MRA.00420-20.atom https://doi.org/10.1128/MRA.00420-20
Identification of the First Oomycete Mating-type Locus Sequence in the Grapevine Downy Mildew Pathogen, Plasmopara viticola
Dussert Y, Legrand L, Mazet ID, Couture C, Piron M-C, Serre R-F, Bouchez O, Mestre P, Toffolatti SL, Giraud T, Delmotte F.
Current Biology (2020) 30, 3897-3907.e4 https://doi.org/10.1016/j.cub.2020.07.057
Culture of rabbit caecum organoids by reconstituting the intestinal stem cell niche in vitro with pharmacological inhibitors or L-WRN conditioned medium.
Mussard E, Pouzet C, Helies V, Pascal G, Fourre S, Cherbuy C, Rubio A, Vergnolle N, Combes S, Beaumont M.
Stem Cell Research (2020) 48, 101980 https://doi.org/10.1016/j.scr.2020.101980
Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis
Foucher J, Ruh M, Préveaux A, Carrère S, Pelletier S, Briand M, Serre R-F, Jacques M-A, Chen NWG.
BMC Genomics (2020) https://doi.org/10.1186/s12864-020-07043-6
Complete Genome Sequence of the Type Strain Pectobacterium punjabense SS95, Isolated from a Potato Plant with Blackleg Symptoms
Sarfraz S, Oulghazi S, Cigna J, Sahi ST, Riaz K, Tufail MR, Fayyaz A, Naveed K, Hameed A, Lopez-Roques C, Vandecasteele C, Faure D.
Microbiology ressource announcements (2020) https://doi.org/10.1128/MRA.00420-20
The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest
Rispe C, Legeai F, Nabity PD, Fernández R, Arora AK, Baa-Puyoulet P, Banfill CR, Bao L, Barberà M, Bouallègue M, Bretaudeau A, Brisson JA, Calevro F, Capy P, Catrice O, Chertemps T, Couture C, Delière L, Douglas AE, Dufault-Thompson K, Escuer P, Feng H, Forneck A, Gabaldón T, Guigó R, Hilliou F, Hinojosa-Alvarez S, Hsiao Y, Hudaverdian S, Jacquin-Joly E, James EB, Johnston S, Joubard B, Le Goff G, Le Trionnaire G, Librado P, Liu S, Lombaert E, Lu H, Maïbèche M, Makni M, Marcet-Houben M, Martínez-Torres D, Meslin C, Montagné N, Moran NA, Papura D, Parisot N, Rahbé Y, Lopes MR, Ripoll-Cladellas A, Robin S, Roques C, Roux P, Rozas J, Sánchez-Gracia A, Sánchez-Herrero JF, Santesmasses D, Scatoni I, Serre R-F, Tang M, Tian W, Umina PA, van Munster M, Vincent-Monégat C, Wemmer J, Wilson ACC, Zhang Y, Zhao C, Zhao J, Zhao S, Zhou X, Delmotte F, Tagu D.
BMC Biology (2020) https://doi.org/10.1186/s12915-020-00820-5
Development of a set of SNP markers for population genetics of the red gorgonian (Paramuricea clavata), an emblematic species of the Mediterranean coralligenous
Padrón M, Milhes M, Massot M, Guichoux E
Conservation Genetics Ressources (2020) https://doi.org/10.1007/s12686-020-01139-7
Convergent rewiring of the virulence regulatory network promotes adaptation of Ralstonia solanacearum on resistant tomato
Gopalan-Nair R, Jardinaud M-F, Legrand L, Landry D, Barlet X, Lopez-Roques C, Vandecasteele C, Bouchez O, Genin S, Guidot A.
Molecular Biology and Evolution (2020) msaa320 https://doi.org/10.1093/molbev/msaa320
Tamoxifen Accelerates Endothelial Healing by Targeting ERα in Smooth Muscle Cell
Zahreddine R, Davezac M, Smirnova NF, Buscato M, Lhuillier E, Lupieri A, Solinhac R, Vinel A, Vessieres E, Henrion D, Renault M-A, Gadeau A-P, Flouriot G, Lenfant F, Laffargue M, Metivier R, Arnal J-F, Fontaine C.
Circulation Research (2020) https://doi.org/10.1161/CIRCRESAHA.120.317062
Versicolorin A, a precursor in aflatoxins biosynthesis, is a food contaminant toxic for human intestinal cells.
Gauthier T, Duarte-Hospital C, Vignard J, Boutet-Robinet E, Sulyok M, Snini SP, Alassane-Kpembi I, Lippi Y, Puel S, Oswald IP, Puel O.
Environment International (2020) 137, 105568 https://doi.org/10.1016/j.envint.2020.105568
Impact of the polycarbonate strippers used in assisted reproduction techniques on embryonic development.
Moreau J, Gatimel N, Lippi Y, Tavenier G, Fauque P, Guilleman M, Naylies C, Huesca AA, Gayrard V, Parinaud J, Leandri RD.
Human Reproduction (Oxford, England) (2020) https://doi.org/10.1093/humrep/deaa290
Hepatocyte-specific deletion of Pparα promotes NAFLD in the context of obesity.
Régnier M, Polizzi A, Smati S, Lukowicz C, Fougerat A, Lippi Y, Fouché E, Lasserre F, Naylies C, Bétoulières C, Barquissau V, Mouisel E, Bertrand-Michel J, Batut A, Saati TA, Canlet C, Tremblay-Franco M, Ellero-Simatos S, Langin D, Postic C, Wahli W, Loiseau N, Guillou H, Montagner A.
Scientific Reports (2020) 10, 6489 https://doi.org/10.1038/s41598-020-63579-3
The brlA Gene Deletion Reveals That Patulin Biosynthesis Is Not Related to Conidiation in Penicillium expansum.
Zetina-Serrano C, Rocher O, Naylies C, Lippi Y, Oswald IP, Lorber S, Puel O.
International Journal of Molecular Sciences (2020) 21 https://doi.org/10.3390/ijms21186660