Valorisation 2017

• DNA-HIC (2015-2017): Molecular characterization and modeling of a bacterial DNA segregation apparatus
• PigLetBiota (2014-2019): Une étude de biologie intégrative de l’influence du microbiote intestinal sur la robustesse des porcelets
• Treasure (2015-2019- H2020): Treatment and Sustainable Reuse of Effluents in semiarid climates
• Bovano (2015-2017): IDENTIFICATION AND FUNCTIONAL STUDY OF CATTLE DELETERIOUS MUTATIONS
• Feed-A-Gene (2015-2020 – H2020) : projet européen pour améliorer l’efficacité alimentaire des monogastriques
• SELGEN – GenSSeq: développement et la mise en œuvre des méthodes à haut débit permettant d’estimer la valeur génétique des animaux et végétaux
• Agri-Métatranscriptomique – diversité: Nouvelles perspectives dans l’étude des communautés microbiennes complexes
• HeliOr (2015-2018) : Séquençage du Génome de l’Orobanche et 2ème génotype Tournesol dans le cadre de SUNRISE
• Meta-Pac (2015-2018): Mise au point des analyses de Metagénomique long read
• EUCLEG_URP3F (2017-) Européen : Breeding forage and grain legumes to increase EU’s and China’s protein self-sufficiency
• STURGEoNOMICS COFASP (2017 – ): Genome-based approaches for improvement of aquaculture in two marine sturgeon species: Atlantic sturgeon and Beluga
• Sex’nPerch FEAMP (2017-) CRB Anim: Genome sequencing of the European Perch, Perca fluviatilis, to improve sex-control for a better management of the perch’s CRB-Anim genetic resources
• GenoFish ANR (2017 – ): Evolution of genes and genomes after whole genome duplication
• Genesea FEAMP (2017- ): Développement et validation d’une procédure de sélection génomique chez le bar et la daurade pour améliorer la résistance à des pathologies
• DG-PHYTOM CASDAR (2017- ): Spectre d’action et déterminisme génétique de la résistance à Phytophthora infestant chez 12 tomates sauvages pour construire des résistances durables au mildiou

Identification of copy number variation in French dairy and beef breeds using next-generation sequencing
Letaief R, Rebours E, Grohs C, Meersseman C, Fritz S, Trouilh L, Esquerré D, Barbieri J, Klopp C, Philippe R, Blanquet V, Boichard D, Rocha D, Boussaha M.
Genet Sel Evol. (2017) Oct 24;49(1):77. doi: 10.1186/s12711-017-0352-z.

Comparative Analysis of Ralstonia solanacearum Methylomes
Ivan Erill, Marina Puigvert, Ludovic Legrand, Rodrigo Guarischi-Sousa, Céline Vandecasteele, João C. Setubal, Stephane Genin, Alice Guidot and Marc Valls
Frontiers in Plant Science (2017) April 2017 | Volume 8 | Article 504, doi: 10.3389/fpls.2017.00504

Diversity and evolution of plastomes in Saharan mimosoids:potential use for phylogenetic and population genetic studies
Mohamed Mensous, Céline Van de Paer, Sophie Manzi, Olivier Bouchez, Djamel Baâli-Cherif, Guillaume Besnard
Tree Genetics & Genomes (2017) 13:48, DOI 10.1007/s11295-017-1131-2

Long noncoding RNA repertoire in chicken liver and adipose tissue
Kévin Muret, Christophe Klopp, Valentin Wucher, Diane Esquerré, Fabrice Legeai, Frédéric Lecerf, Colette Désert, Morgane Boutin, Frédéric Jehl, Hervé Acloque, Elisabetta Giuffra, Sarah Djebali, Sylvain Foissac, Thomas Derrien and Sandrine Lagarrigue
Genet Sel Evol (2017) 49:6, DOI 10.1186/s12711-016-0275-0

Draft Genome Sequence of DesulfovibrioBerOc1, a Mercury-Methylating Strain
Marisol Goñi Urriza, Claire Gassie, Oliver Bouchez, Christophe Klopp, Rémy Guyoneaud
American Society For Microbiology, Volume 5 Issue 3 e01483-16

Whole-genome analysis of introgressive hybridization and characterization of the bovine legacy of Mongolian yaks
Ivica Medugorac, Alexander Graf, Cécile Grohs, Sophie Rothammer, Yondon Zagdsuren, Elena Gladyr, Natalia Zinovieva, Johanna Barbieri, Doris Seichter, Ingolf Russ, André Eggen, Garrett Hellenthal, Gottfried Brem, Helmut Blum, Stefan Krebs & Aurélien Capitan
Nature Genetics, doi:10.1038/ng.3775

A novel locus on chromosome 1 underlies the evolution of a melanic plumage polymorphism in a wild songbird
Yann XC Bourgeois, Boris Delahaie, Mathieu Gautier, Emeline Lhuillier, Pierre-Jean G. Malé, Joris AM Bertrand, Josselin Cornuault, Kazumasa Wakamatsu, Olivier Bouchez, Claire Mould, Jade Bruxaux, Hélène Holota, Borja Milá, and Christophe Thébaud
Royal Society Open Science (2017) 4: 160805. http://dx.doi.org/10.1098/rsos.160805

Lowering relative humidity level increases epidermal protein deimination and drives human filaggrin breakdown
Laura Cau, Valérie Pendaries, Emeline Lhuillier, Paul R. Thompson, Guy Serre, Hidenari Takahara, Marie-Claire Méchin, Michel Simon
Journal of Dermatological Science (2017)  http://dx.doi.org/10.1016/j.jdermsci.2017.02.280

PNPLA1 defects in patients with autosomal recessive congenital ichthyosis and KO mice sustain PNPLA1 irreplaceable function in epidermal omega-Oacylceramide synthesis and skin permeability barrier
Melanie Pichery, Anne Huchenq, Roger Sandhoff, Maella Severino-Freire, Sarra Zaafouri, Lukas Opalka, Thierry Levade, Vanessa Soldan, Justine Bertrand-Michel, Emeline Lhuillier, Guy Serre, Annabel Maruani, Juliette Mazereeuw-Hautier and Nathalie Jonca
Human Molecular Genetics (2017) doi: 10.1093/hmg/ddx079

Circulating miR-155, miR-145 and let-7c as diagnostic biomarkers of the coronary artery disease.
Faccini J, Ruidavets JB, Cordelier P, Martins F, Maoret JJ, Bongard V, Ferrières J, Roncalli J, Elbaz M, Vindis C.
Sci Rep. 2017 Feb 16;7:42916. doi: 10.1038/srep42916.

Muscle transcriptome analysis reveals molecular pathways and biomarkers involved in extreme ultimate pH and meat defect occurrence in chicken.
Beauclercq S, Hennequet-Antier C, Praud C, Godet E, Collin A, Tesseraud S, Métayer-Coustard S, Bourin M, Moroldo M, Martins F, Lagarrigue S, Bihan-Duval EL, Berri C.
Sci Rep. 2017 Jul 25;7(1):6447. doi: 10.1038/s41598-017-06511-6.

Inferring the demographic history underlying parallel genomic divergence among pairs of parasitic and non-parasitic lamprey ecotypes
Quentin Rougemont, Pierre-Alexandre Gagnaire, Charles Perrier, Clémence Genthon, Anne-Laure Besnard, Sophie Launey, Guillaume Evanno
Mol Ecol. 2017 Jan;26(1):142-162. doi: 10.1111/mec.13664. Epub 2016 Jul 12.

Experimental evolution of rhizobia may lead to either extra- or intracellular symbiotic adaptation depending on the selection regime
MARTA MARCHETTI , CAMILLE CLERISSI , YASMINE YOUSFI, CARINE GRIS, OLIVIER BOUCHEZ, EDUARDO ROCHA, STEPHANE CRUVEILLER, ALAIN JAUNEAU, DELPHINE CAPELA and CATHERINE MASSON-BOIVIN
Mol Ecol. 2017 Apr;26(7):1818-1831. doi: 10.1111/mec.13895. Epub 2016 Nov 12.

• Journée Long Reads : Dream or Reality, GeT 28/11/2017 – Denis Milan : GeT Strategy & News
• Journée Long Reads : Dream or Reality, GeT 28/11/2017 – Catherine Zanchetta et Maxime Manno : MinION, GridION, how does Nanopore technology meet the needs of our users ?
• Journée Long Reads : Dream or Reality, GeT 28/11/2017 – Olivier Bouchez et Claire Kuchly : Implementation and Evaluation of 10X Genomics Chromium technology
• Journée Forum interne Fédération de Recherche Agrobiosciences, Interactions & BioDiversité (FR AIB) 17/11/2017 – Céline Vandecasteele : GeT the latest technology news
• Journée Nanoseq-2017 06/10/2017 – Catherine Zanchetta : How does Nanopore technology meet the needs of our users ?
• AG France Génomique 22 et 23/06/2017 – Catherine Zanchetta et Maxime Manno : From DNA preparation to the assembly, trying to get the best of the MinION
• Journée User Meeting Oxford Nanopore Technology (ONT) 06/06/2017 – Catherine Zanchetta : How does the Nanopore technology meet the needs of our users ?
• Journées ONT London Calling 04 et 05/05/2017 – Jean-Luc Guérin : Direct whole genome sequencing of poxvirus using Oxford Nanopore MinIon
• Journées ONT London Calling 04 et 05/05/2017 – Denis Milan : GeT experience on long fragments technologies
• Journées ONT London Calling 04 et 05/05/2017 – Catherine Zanchetta : Implementation and evaluation of the MinION
• Journées CATI Bios4Biol INRA Toulouse 21/02/2017 – Pauline Heuillard : Plateforme Génome et Transcriptome – Les Nouveautés